SecReT6
I. Summary
SecReT6 ID923 insolico
StrainNiastella koreensis GR20-10
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016609
Location3225267..3252691
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111111111
ComponentTssOTssPHcp
Number112
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Niako_25963223124..3223705 [-], 582375145899hypothetical protein 
2Niako_25973223766..3225130 [-], 1365375145900hypothetical protein 
3Niako_25983225267..3227084 [-], 1818375145901Rhs element Vgr protein  VgrG
4Niako_25993227200..3227589 [-], 390375145902hypothetical protein  Hcp
5Niako_26003227706..3228092 [-], 387375145903hypothetical protein  Hcp
6Niako_26013228387..3229769 [-], 1383375145904hypothetical protein  TssC
7Niako_26023229813..3230265 [-], 453375145905hypothetical protein  TssB
8Niako_26033230590..3233076 [-], 2487375145906ATPase AAA-2 domain-containing protein  ClpV
9Niako_26043233129..3234175 [-], 1047375145907PKD domain-containing protein  TssP
10Niako_26053234209..3234847 [+], 639375145908NLP/P60 protein 
11Niako_26063234936..3235457 [-], 522375145909hypothetical protein  TssO
12Niako_26073235492..3236673 [-], 1182375145910hypothetical protein  TssK
13Niako_26083236703..3237572 [-], 870375145911hypothetical protein  TssN
14Niako_26093237634..3238569 [-], 936375145912hypothetical protein  TssG
15Niako_26103238707..3240575 [-], 1869375145913hypothetical protein  TssF
16Niako_26113240647..3241081 [-], 435375145914gpW/GP25 family protein  TssE
17Niako_26123241382..3242305 [+], 924375145915hypothetical protein 
18Niako_26133242364..3243119 [+], 756375145916lysine exporter protein LysE/YggA 
19Niako_26143243302..3245785 [+], 2484375145917hypothetical protein 
20Niako_26153245817..3246779 [+], 963375145918Ion transport 2 domain-containing protein 
21Niako_26163246880..3247530 [+], 651375145919hypothetical protein 
22Niako_26173247625..3248452 [-], 828375145920formyltetrahydrofolate deformylase 
23Niako_26183248595..3251627 [-], 3033375145921TonB-dependent receptor 
24Niako_26193251654..3252691 [-], 1038375145922anti-FecI sigma factor FecR 
25Niako_26203252780..3253340 [-], 561375145923ECF subfamily RNA polymerase sigma-24 subunit 
26Niako_26213253563..3253790 [+], 228375145924hypothetical protein 
27Niako_26223254095..3254436 [-], 342375145925AraC family transcriptional regulator 
28Niako_26233255477..3255731 [-], 255375145926hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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