SecReT6
I. Summary
SecReT6 ID924 insolico
StrainGranulicella mallensis MP5ACTX8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016631
Location2273085..2292171
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number101101110
ComponentTssOTssPHcp
Number000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AciX8_19352268253..2273061 [+], 4809374310866serine/threonine protein kinase 
2AciX8_19362273085..2274674 [+], 1590374310867Rhs element Vgr protein  VgrG
3AciX8_19372274684..2277233 [+], 2550374310868Gp5 domain protein 
4AciX8_19382277252..2278247 [+], 996374310869hypothetical protein 
5AciX8_19392278251..2279042 [+], 792374310870hypothetical protein 
6AciX8_19402279039..2279578 [+], 540374310871hypothetical protein 
7AciX8_19412279694..2280461 [-], 768374310872metallophosphoesterase 
8AciX8_19422280415..2280981 [-], 567374310873hypothetical protein 
9AciX8_19432280986..2281246 [-], 261374310874hypothetical protein 
10AciX8_19442281239..2281973 [-], 735374310875hypothetical protein 
11AciX8_19452281957..2282889 [-], 933374310876UBA/THIF-type NAD/FAD binding protein 
12AciX8_19462283079..2284056 [+], 978374310877forkhead-associated protein 
13AciX8_19472284053..2285507 [+], 1455374310878von Willebrand factor type A 
14AciX8_19482285519..2286022 [+], 504374310879hypothetical protein  TssB
15AciX8_19492286022..2287365 [+], 1344374310880hypothetical protein  TssC
16AciX8_19502287423..2287926 [+], 504374310881hypothetical protein 
17AciX8_19512287923..2289605 [+], 1683374310882hypothetical protein  TssF
18AciX8_19522289602..2290501 [+], 900374310883hypothetical protein  TssG
19AciX8_19532290498..2292171 [+], 1674374310884hypothetical protein  TssK
20AciX8_19542292260..2294365 [+], 2106374310885forkhead-associated protein  Fha
21AciX8_19552294421..2295275 [-], 855374310886AraC family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Russell AB et al. (2014). A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism. Cell Host Microbe. 16(2):227-36. [PudMed:25070807] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation