SecReT6
I. Summary
SecReT6 ID925 insolico
StrainGranulicella mallensis MP5ACTX8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016631
Location5333227..5348895
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number111101110
ComponentTssOTssPHcp
Number000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AciX8_41755328493..5328753 [-], 261374313054hypothetical protein 
2AciX8_41765328794..5329513 [-], 720374313055hypothetical protein 
3AciX8_41775329497..5330600 [-], 1104374313056UBA/THIF-type NAD/FAD binding protein 
4AciX8_41785330790..5331740 [+], 951374313057forkhead-associated protein 
5AciX8_41795331742..5333208 [+], 1467374313058von Willebrand factor type A 
6AciX8_41805333227..5333727 [+], 501374313059hypothetical protein  TssB
7AciX8_41815333731..5335071 [+], 1341374313060hypothetical protein  TssC
8AciX8_41825335095..5335550 [+], 456374313061hypothetical protein 
9AciX8_41835335597..5336073 [+], 477374313062hypothetical protein 
10AciX8_41845336141..5336590 [+], 450374313063hypothetical protein 
11AciX8_41855336663..5337025 [+], 363374313064hypothetical protein 
12AciX8_41865337055..5338746 [+], 1692374313065hypothetical protein  TssF
13AciX8_41875338737..5339735 [+], 999374313066hypothetical protein  TssG
14AciX8_41885339732..5341531 [+], 1800374313067hypothetical protein  TssK
15AciX8_41895341561..5344305 [+], 2745374313068ATPase AAA-2 domain-containing protein  ClpV
16AciX8_41905344302..5346458 [+], 2157374313069forkhead-associated protein  Fha
17AciX8_41915346492..5347220 [+], 729374313070protein serine/threonine phosphatase 
18AciX8_41925347336..5348895 [+], 1560374313071Rhs element Vgr protein  VgrG
19AciX8_41935348956..5349537 [+], 582374313072hypothetical protein 
20AciX8_41945349554..5350291 [+], 738374313073hypothetical protein 
21AciX8_41955350310..5351218 [+], 909374313074hypothetical protein 
22AciX8_41965351243..5351980 [+], 738374313075hypothetical protein 
23AciX8_41975352020..5352580 [+], 561374313076hypothetical protein 
24AciX8_41985352701..5353279 [+], 579374313077regulatory protein TetR 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Russell AB et al. (2014). A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism. Cell Host Microbe. 16(2):227-36. [PudMed:25070807] experimental in_silico
 
experimental This literature contains experimental investigation
in_silico This literature contains bioinformatics investigation