I. Summary

SecReT6 ID	926
Strain	Bacteroides fragilis 638R
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016776
Location	2330059..2352459
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	1	1	1	1	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	2	1	5

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	BF638R_1970	2327276..2327644 [-], 369	375358264	hypothetical protein
2	BF638R_1971	2327685..2330057 [-], 2373	375358265	hypothetical protein
3	BF638R_1972	2330059..2330952 [-], 894	375358266	hypothetical protein	TssP
4	BF638R_1973	2330949..2331476 [-], 528	375358267	hypothetical protein	TssO
5	BF638R_1974	2331489..2331992 [-], 504	375358268	hypothetical protein	TssO
6	BF638R_1975	2331998..2332954 [-], 957	375358269	hypothetical protein	TssG
7	BF638R_1976	2332956..2334098 [-], 1143	375358270	hypothetical protein	TssK
8	BF638R_1977	2334126..2334974 [-], 849	375358271	putative transmembrane protein	TssN
9	BF638R_1978	2335034..2336050 [-], 1017	375358272	putative transmembrane protein
10	BF638R_1979	2336050..2339019 [-], 2970	375358273	putative transmembrane protein
11	BF638R_1980	2339030..2339716 [-], 687	375358274	hypothetical protein	PAAR
12	BF638R_1981	2339735..2341585 [-], 1851	375358275	hypothetical protein	VgrG
13	BF638R_1982	2341611..2343428 [-], 1818	375358276	hypothetical protein	TssF
14	BF638R_1983	2343459..2343899 [-], 441	375358277	putative bacteriophage Gp25 protein	TssE
15	BF638R_1984	2343896..2344354 [-], 459	375358278	hypothetical protein
16	BF638R_1985	2344359..2344778 [-], 420	375358279	hypothetical protein	Hcp
17	BF638R_1986	2344781..2345188 [-], 408	375358280	hypothetical protein	Hcp
18	BF638R_1987	2345381..2345782 [-], 402	375358281	putative transmembrane protein
19	BF638R_1988	2345779..2346774 [-], 996	375358282	putative transmembrane protein
20	BF638R_1989	2346787..2347191 [-], 405	375358283	hypothetical protein	Hcp
21	BF638R_1990	2347197..2347625 [-], 429	375358284	hypothetical protein	Hcp
22	BF638R_1991	2347641..2350124 [-], 2484	375358285	putative ATP-dependent protease	ClpV
23	BF638R_1992	2350137..2351516 [-], 1380	375358286	hypothetical protein	TssC
24	BF638R_1993	2351532..2351981 [-], 450	375358287	hypothetical protein	TssB
25	BF638R_1994	2352070..2352459 [-], 390	375358288	hypothetical protein	Hcp
26	BF638R_1995	2352900..2353640 [-], 741	375358289	hypothetical protein
27	BF638R_1996	2353988..2355259 [+], 1272	375358290	putative aminotransferase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

Bf638R_1988 , Bf638R_1979

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	BF638R_1988	2345779..2346774 [-], 996	375358282	putative transmembrane protein	Bf638R_1988
Data from experimental literature

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Proteins        Genes

Homology Immunity protein list

Bf638R_1987, Bf638R_1978

Immunity protein identified
#	Locus tag(Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog

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Proteins        Genes

N/A