SecReT6
I. Summary
SecReT6 ID927 insolico
StrainPrevotella intermedia 17
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_017860
Location517186..541941
Comment
FunctionN/A
T6SS TypeType iii
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentVgrGClpVTssBTssCTssETssFTssGTssKTssN
Number211011111
ComponentTssOTssPHcp
Number111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PIN17_0479512484..513977 [-], 1494387132023RNA methylase, PF01170 family 
2PIN17_0480514325..515197 [-], 873387132024sigma-70, region 3 
3PIN17_0481515495..515650 [+], 156387132025hypothetical protein 
4PIN17_0483517186..517644 [-], 459387132026hypothetical protein  TssB
5PIN17_0484518018..518377 [-], 360387132027hypothetical protein 
6PIN17_0485518470..518790 [-], 321387132028hypothetical protein 
7PIN17_0486518787..519566 [-], 780387132029PF08929 domain protein 
8PIN17_0487520222..520833 [-], 612387132030PF08906 domain protein 
9PIN17_0488520847..522817 [-], 1971387132031hypothetical protein 
10PIN17_0489522951..523940 [-], 990387132032hypothetical protein 
11PIN17_0490523948..525057 [-], 1110387132033phage-like baseplate assembly protein  VgrG
12PIN17_0491525013..525810 [+], 798387132034hypothetical protein 
13PIN17_0492525887..526000 [+], 114387132035hypothetical protein 
14PIN17_0493526012..526389 [-], 378387132036hypothetical protein  Hcp
15PIN17_0494526973..527095 [+], 123387132037hypothetical protein 
16PIN17_0495527118..527447 [+], 330387132038putative lysozyme  TssE
17PIN17_0496527460..529217 [+], 1758387132039hypothetical protein  TssF
18PIN17_0497529214..531655 [+], 2442387132040hypothetical protein  ClpV
19PIN17_0498531640..532575 [+], 936387132041hypothetical protein  TssG
20PIN17_0499532585..533469 [+], 885387132042hypothetical protein  TssN
21PIN17_0500533474..534607 [+], 1134387132043hypothetical protein  TssK
22PIN17_0501534622..535107 [+], 486387132044hypothetical protein  TssO
23PIN17_0502535162..535566 [+], 405387132045hypothetical protein 
24PIN17_0503535575..536549 [+], 975387132046PKD domain-containing protein  TssP
25PIN17_0504536562..538829 [+], 2268387132047hypothetical protein 
26PIN17_0505539110..539271 [+], 162387132048hypothetical protein 
27PIN17_0508539910..540023 [-], 114387132049hypothetical protein 
28PIN17_0509540100..540813 [-], 714387132050hypothetical protein 
29PIN17_0510540778..541941 [+], 1164387132051phage-like baseplate assembly protein  VgrG
30PIN17_0511541953..542801 [+], 849387132052hypothetical protein 
31PIN17_0512542791..543945 [+], 1155387132053hypothetical protein 
32PIN17_0513543966..544874 [+], 909387132054hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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