I. Summary

SecReT6 ID	927
Strain	Prevotella intermedia 17
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_017860
Location	517186..541941
Comment
Function	N/A
T6SS Type	Type iii
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	VgrG	ClpV	TssB	TssC	TssE	TssF	TssG	TssK	TssN
Number	2	1	1	0	1	1	1	1	1
Component	TssO	TssP	Hcp
Number	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PIN17_0479	512484..513977 [-], 1494	387132023	RNA methylase, PF01170 family
2	PIN17_0480	514325..515197 [-], 873	387132024	sigma-70, region 3
3	PIN17_0481	515495..515650 [+], 156	387132025	hypothetical protein
4	PIN17_0483	517186..517644 [-], 459	387132026	hypothetical protein	TssB
5	PIN17_0484	518018..518377 [-], 360	387132027	hypothetical protein
6	PIN17_0485	518470..518790 [-], 321	387132028	hypothetical protein
7	PIN17_0486	518787..519566 [-], 780	387132029	PF08929 domain protein
8	PIN17_0487	520222..520833 [-], 612	387132030	PF08906 domain protein
9	PIN17_0488	520847..522817 [-], 1971	387132031	hypothetical protein
10	PIN17_0489	522951..523940 [-], 990	387132032	hypothetical protein
11	PIN17_0490	523948..525057 [-], 1110	387132033	phage-like baseplate assembly protein	VgrG
12	PIN17_0491	525013..525810 [+], 798	387132034	hypothetical protein
13	PIN17_0492	525887..526000 [+], 114	387132035	hypothetical protein
14	PIN17_0493	526012..526389 [-], 378	387132036	hypothetical protein	Hcp
15	PIN17_0494	526973..527095 [+], 123	387132037	hypothetical protein
16	PIN17_0495	527118..527447 [+], 330	387132038	putative lysozyme	TssE
17	PIN17_0496	527460..529217 [+], 1758	387132039	hypothetical protein	TssF
18	PIN17_0497	529214..531655 [+], 2442	387132040	hypothetical protein	ClpV
19	PIN17_0498	531640..532575 [+], 936	387132041	hypothetical protein	TssG
20	PIN17_0499	532585..533469 [+], 885	387132042	hypothetical protein	TssN
21	PIN17_0500	533474..534607 [+], 1134	387132043	hypothetical protein	TssK
22	PIN17_0501	534622..535107 [+], 486	387132044	hypothetical protein	TssO
23	PIN17_0502	535162..535566 [+], 405	387132045	hypothetical protein
24	PIN17_0503	535575..536549 [+], 975	387132046	PKD domain-containing protein	TssP
25	PIN17_0504	536562..538829 [+], 2268	387132047	hypothetical protein
26	PIN17_0505	539110..539271 [+], 162	387132048	hypothetical protein
27	PIN17_0508	539910..540023 [-], 114	387132049	hypothetical protein
28	PIN17_0509	540100..540813 [-], 714	387132050	hypothetical protein
29	PIN17_0510	540778..541941 [+], 1164	387132051	phage-like baseplate assembly protein	VgrG
30	PIN17_0511	541953..542801 [+], 849	387132052	hypothetical protein
31	PIN17_0512	542791..543945 [+], 1155	387132053	hypothetical protein
32	PIN17_0513	543966..544874 [+], 909	387132054	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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