 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | U876_13425 | 2931295..2932245 [+], 951 | 827372781 | thioredoxin reductase | |
2 | U876_13430 | 2932303..2933550 [+], 1248 | 827372782 | diguanylate cyclase | |
3 | U876_13435 | 2933661..2934131 [-], 471 | 827372783 | membrane protein | |
4 | U876_13440 | 2934151..2934858 [+], 708 | 827372784 | leucyl/phenylalanyl-tRNA--protein transferase | |
5 | U876_13445 | 2934855..2935571 [+], 717 | 827372785 | arginyl-tRNA-protein transferase | |
6 | U876_13450 | 2935641..2935859 [+], 219 | 827372786 | translation initiation factor IF-1 | |
7 | U876_13455 (clpA) | 2935924..2938176 [-], 2253 | 827372787 | Clp protease ClpX | TssH |
8 | U876_13460 (clpS) | 2938236..2938553 [-], 318 | 827372788 | Clp protease ClpS | |
9 | U876_13465 | 2938782..2939000 [+], 219 | 827372789 | stationary phase/starvation inducible regulatory protein CspD | |
10 | U876_13470 | 2939107..2939970 [-], 864 | 827372790 | methenyltetrahydrofolate cyclohydrolase | |
11 | U876_13490 | 2940694..2940843 [+], 150 | 827372791 | transposase | |
12 | U876_13495 | 2942069..2944681 [-], 2613 | 827372792 | hypothetical protein | |
13 | U876_13500 | 2944800..2946848 [-], 2049 | 827372793 | type IV secretion protein Rhs | TssI |
14 | U876_13505 | 2946859..2947146 [-], 288 | 827372794 | hypothetical protein | |
15 | U876_13510 | 2947404..2948834 [-], 1431 | 827372795 | membrane protein | TssA |
16 | U876_13515 | 2948881..2952366 [-], 3486 | 827372796 | type VI secretion protein IcmF | TssM |
17 | U876_13520 | 2952408..2953853 [-], 1446 | 827372797 | type VI secretion protein | TssA |
18 | U876_13525 | 2953862..2954467 [-], 606 | 827372798 | type VI secretion protein | |
19 | U876_13530 | 2954467..2956005 [-], 1539 | 827372799 | ATPase AAA | |
20 | U876_13535 | 2956008..2958650 [-], 2643 | 827372800 | Clp protease ClpV | TssH |
21 | U876_13540 | 2958671..2959450 [-], 780 | 827372801 | type IV secretion protein DotU | TssL |
22 | U876_13545 | 2959473..2960807 [-], 1335 | 827372802 | hypothetical protein | TssK |
23 | U876_13550 | 2960810..2961325 [-], 516 | 827372803 | hypothetical protein | TssJ |
24 | U876_13555 | 2961325..2962575 [-], 1251 | 827372804 | type VI secretion protein | |
25 | U876_13560 | 2962632..2963630 [-], 999 | 827372805 | type VI secretion protein | TssG |
26 | U876_13565 | 2963594..2965360 [-], 1767 | 827372806 | type VI secretion protein | TssF |
27 | U876_13570 | 2965364..2965795 [-], 432 | 827372807 | lysozyme | TssE |
28 | U876_13575 | 2965802..2967280 [-], 1479 | 827372808 | type VI secretion protein | TssC |
29 | U876_13580 | 2967319..2967822 [-], 504 | 827372809 | type VI secretion protein | TssB |
30 | U876_13590 | 2970004..2970549 [-], 546 | 827372810 | hypothetical protein | |
31 | U876_13595 | 2970673..2971662 [-], 990 | 827372811 | hypothetical protein | |
32 | U876_13600 | 2971672..2972991 [-], 1320 | 827372812 | hypothetical protein | |
33 | U876_13605 | 2972993..2975224 [-], 2232 | 827372813 | type IV secretion protein Rhs | TssI |
34 | U876_13610 | 2975502..2976020 [-], 519 | 827372814 | hypothetical protein | TssD |
35 | U876_13625 | 2977178..2977639 [-], 462 | 827372815 | histidine kinase | |
36 | U876_13630 | 2977792..2979129 [+], 1338 | 827372816 | hypothetical protein | |
37 | U876_13635 | 2979198..2979779 [-], 582 | 827372817 | thymidine kinase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein