SecReT6
Effector Protein ID: 50121790
-
SecReT6 ID40
T6SS typeA1
Gene symbol-
Locus tagECA2866
StrainPectobacterium atrosepticum SCRI1043
Repliconchromosome [GenBank: NC_004547] [Browse all T6SS(s) in this replicon]
Location [Strand]3204842..3205360 [+]
Producthypothetical protein
Effector typeProtein
Homologous effectorECA2866
DescriptionHcp protein
UniProt IDQ6D378
KEGG IDeca:ECA2866
PDB IDNA
Domain hit(s) vs Pfam DUF796 [PF05638], Evalue: 9.80E-35, Aligned region: 6..156
Protein Sequence: 172 a.a.     [Download]
>gi|50121790|ref|YP_050957.1| unnamed protein product [Pectobacterium atrosepticum SCRI1043]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHIVTVPTDPQSGQPSGQRVHKPFKF
TVALNKAVPLMYNALASGEMLPNVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCKMPHCQDPSKLDYTQ
LIEVSLAYRKVDWEHTVAGTSGSDDWRTPVEA
-
Nucleotide Sequence: 519 bp     [Download]
>gi|50118965|ref|NC_004547.2|:3204842-3205360 Pectobacterium atrosepticum SCRI1043 chromosome, complete genome
ATGCCAACTCCATGCTATATCAGCATCGAAGGTAAGACACAGGGCAACATCACCGCAGGTGCCTTCACTT
CTGACTCTGTCGGCAACATCTATGTGGAAGGCCACGAAGATGAAATGCTGGTGCAGGAATTCAAACACAT
CGTCACCGTACCGACCGACCCGCAGTCTGGTCAGCCATCCGGCCAGCGTGTACACAAACCATTCAAATTC
ACTGTCGCGCTGAACAAAGCCGTTCCGCTGATGTACAACGCCCTGGCCTCCGGTGAAATGCTGCCGAACG
TGACCCTGAAATGGTACCGCACGTCGGTTGAAGGTAAGCAGGAGCACTTTTTCTCTACTGTGCTGACCGA
CGCCACCATCGTCGACATCGATTGCAAAATGCCACACTGCCAGGACCCGTCCAAACTGGATTACACCCAG
TTAATCGAAGTGTCGCTGGCCTACCGCAAGGTTGACTGGGAACACACGGTTGCCGGTACCTCCGGCTCTG
ACGACTGGCGTACACCGGTCGAAGCGTAA

Reference
(1) Mattinen L et al. (2008). Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum. Microbiology. 154(Pt 8):2387-96. [PudMed:18667571]