SecReT6
Effector Protein ID: 50123195
-
SecReT6 ID40
T6SS typeA1
Gene symbol-
Locus tagECA4275
StrainPectobacterium atrosepticum SCRI1043
Repliconchromosome [GenBank: NC_004547] [Browse all T6SS(s) in this replicon]
Location [Strand]4790053..4790571 [+]
Producthypothetical protein
Effector typeProtein
Homologous effectorECA4275
DescriptionHcp protein
UniProt IDQ6CZ78
KEGG IDeca:ECA4275
PDB IDNA
Domain hit(s) vs Pfam DUF796 [PF05638], Evalue: 1.40E-34, Aligned region: 6..156
Protein Sequence: 172 a.a.     [Download]
>gi|50123195|ref|YP_052362.1| unnamed protein product [Pectobacterium atrosepticum SCRI1043]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIYVEGHEDEMLVQEFKHVVTVPTDPQSGQPSGQRVHKPFKF
TVALNKAVPLLYNALSTGEMLPTTTLKWYRTSVEGKQEHFFSTILTDATIVDIDCKMPHCQDPSKLDYTQ
LIEVSLAYRKIDWEHTVAGTSGSDDWRAPVEA
-
Nucleotide Sequence: 519 bp     [Download]
>gi|50118965|ref|NC_004547.2|:4790053-4790571 Pectobacterium atrosepticum SCRI1043 chromosome, complete genome
ATGCCAACTCCATGCTATATCAGCATCGAAGGGAAAACTCAGGGCAACATCACCGCCGGTGCCTTCACGT
CTGATTCTGTCGGCAACATCTATGTCGAAGGCCACGAAGACGAAATGCTGGTGCAGGAATTCAAACACGT
GGTTACCGTGCCGACCGACCCGCAGTCTGGTCAGCCATCTGGCCAGCGCGTGCACAAGCCGTTCAAATTC
ACCGTCGCGCTGAACAAAGCCGTTCCACTGCTGTACAACGCACTGTCTACCGGTGAAATGCTGCCGACCA
CAACCCTGAAGTGGTATCGCACCTCGGTGGAAGGCAAGCAGGAGCACTTCTTCTCTACCATCCTGACCGA
TGCCACCATCGTGGATATCGACTGCAAAATGCCACACTGCCAGGATCCGTCCAAGCTGGATTACACCCAA
CTGATTGAAGTGTCGCTGGCTTACCGCAAAATCGACTGGGAACACACCGTGGCCGGCACGTCCGGCTCCG
ATGACTGGCGTGCGCCGGTCGAAGCGTAA

Reference
(1) Mattinen L et al. (2008). Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum. Microbiology. 154(Pt 8):2387-96. [PudMed:18667571]