SecReT6 contains data from 896 references related to type VI secretion systems (T6SSs). Last Update: March 21st, 2015

Categories (Literatures contain following contents are categorized)
reviews experimental studies bioinformatics genome sequencing T6SS component T6SS effectors
effector translocation structural study regulation other

Number of references found for the 'bioinformatics' category : 190

(1) Bondage DD, Lin JS, Ma LS, Kuo CH, Lai EM (2016) VgrG C terminus confers the type VI effector transport specificity and is required for binding with PAAR and adaptor-effector complex. Proc Natl Acad Sci U S A. 113(27):E3931-40. [PMID:27313214]
(2) Liu C et al (2015) Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. BMC Genomics. 16(1):717. [PMID:26391348]
(3) Gao R et al (2015) Genome-wide RNA sequencing analysis of quorum sensing-controlled regulons in the plant-associated Burkholderia glumae strain PG1. Appl Environ Microbiol. pii: AEM.01043-15. [PMID:26362987]
(4) Martinez-Garcia PM et al (2015) Bioinformatics Analysis of the Complete Genome Sequence of the Mango Tree Pathogen Pseudomonas syringae pv. syringae UMAF0158 Reveals Traits Relevant to Virulence and Epiphytic Lifestyle. PLoS One. 10(8):e0136101. [PMID:26313942]
(5) Trantas EA et al (2015) Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front Microbiol. 6:811. [PMID:26300874]
(6) Pang M et al (2015) Novel insights into the pathogenicity of epidemic Aeromonas hydrophila ST251 clones from comparative genomics. Sci Rep. 5:9833. [PMID:26014286]
(7) Burroughs AM et al (2015) Secretion systems in Gram-negative bacteria: structural and mechanistic insights. Biol Direct. 10(1):21. [PMID:25976611]
(8) Suzuki M et al (2015) Genome Sequence of a Carbapenem-Resistant Strain of Ralstonia mannitolilytica. Genome Announc. 3(3). [PMID:25953190]
(9) Seo YS et al (2015) Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts. BMC Genomics. 16:349. [PMID:25943361]
(10) Kang H et al (2015) Characterization and Genomic Analysis of Quinolone-Resistant Delftia sp. 670 Isolated from a Patient Who Died from Severe Pneumonia. Curr Microbiol. . [PMID:25935202]
(11) Osterman J et al (2015) Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes. BMC Genomics. 16:348. [PMID:25933608]
(12) Martinez-Garica PM et al (2015) T346Hunter: A Novel Web-Based Tool for the Prediction of Type III, Type IV and Type VI Secretion Systems in Bacterial Genomes. PLoS One. 10(4):e0119317. [PMID:25867189]
(13) Li P et al (2015) Comparative Genome Analyses of Serratia marcescens FS14 Reveals Its High Antagonistic Potential. PLoS One. 10(4):e0123061. [PMID:25856195]
(14) Choudhury JD et al (2015) The Pathogen of the Great Barrier Reef Sponge Rhopaloeides odorabile Is a New Strain of Pseudoalteromonas agarivorans Containing Abundant and Diverse Virulence-Related Genes. Mar Biotechnol (NY). doi:10.1007/s10126-015-9627-y. [PMID:25837832]
(15) Jones CL et al (2015) Fatal Outbreak of an Emerging Clone of Extensively Drug-Resistant Acinetobacter baumannii With Enhanced Virulence. Clin Infect Dis. pii: civ225. [PMID:25824815]
(16) Ge P et al (2015) Atomic structures of a bactericidal contractile nanotube in its pre- and postcontraction states. Nat Struct Mol Biol. doi: 10.1038/nsmb.2995. [PMID:25822993]
(17) Richards VP et al (2015) Genome Based Phylogeny and Comparative Genomic Analysis of Intra-Mammary Pathogenic Escherichia coli. PLoS One. 10(3):e0119799. [PMID:25807497]
(18) Collins AJ et al (2015) Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes. Front Microbiol. 6:123. [PMID:25755651]
(19) Raveh-Sadka T et al (2015) Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development. Elife. 4. [PMID:25735037]
(20) Martinez-Garcia PM et al (2015) Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae. Stand Genomic Sci. 10:10. [PMID:25685259]
(21) Li J et al (2015) SecReT6: a web-based resource for type VI secretion systems found in bacteria. Environ Microbiol. doi: 10.1111/1462-2920.12794. [PMID:25640659]
(22) Cui Y et al (2015) Epidemic clones, oceanic gene pools and eco-LD in the free living marine pathogen Vibrio parahaemolyticus. Mol Biol Evol. pii: msv009. [PMID:25605790]
(23) Langridge GC et al (2015) Patterns of genome evolution that have accompanied host adaptation in Salmonella. Proc Natl Acad Sci U S A. 112(3):863-8. [PMID:25535353]
(24) Grube M et al (2015) Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics. ISME J. 9(2):412-24. [PMID:25072413]
(25) Liu F et al (2014) Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants. BMC Genomics. 15(1):1163. [PMID:25534766]
(26) Ugarte-Ruiz M et al (2014) Prevalence of Type VI Secretion System in Spanish Campylobacter jejuni Isolates. Zoonoses Public Health. doi: 10.1111/zph.12176. [PMID:25496466]
(27) Li H et al (2014) Evolution of carbapenem-resistant Acinetobacter baumannii through whole genome sequencing and comparative genomic analysis. Antimicrob Agents Chemother. 59(2):1168-76. [PMID:25487793]
(28) Lu D et al (2014) The structural basis of the Tle4-Tli4 complex reveals the self-protection mechanism of H2-T6SS in Pseudomonas aeruginosa. Acta Crystallogr D Biol Crystallogr. 70(Pt 12):3233-43. [PMID:25478841]
(29) Chang JH et al (2014) Crystal structure of the bacterial type VI secretion system component TssL from Vibrio cholerae. J Microbiol. 53(1):32-7. [PMID:25471186]
(30) Shao S et al (2014) Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813T encoding two distinct T3SS and three T6SS gene clusters: Propose a novel species as Edwardsiella anguillarum sp. nov . Syst Appl Microbiol. 38(1):36-47. [PMID:25466920]
(31) Abby SS et al (2014) Bacteria in Ostreococcus tauri cultures - friends, foes or hitchhikers?. Front Microbiol. 5:505. [PMID:25426102]
(32) Eijkelkamp BA et al (2014) Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii. BMC Genomics. 15(1):1020. [PMID:25422040]
(33) Yap KP et al (2014) Comparative genomics of closely related Salmonella enterica serovar Typhi strains reveals genome dynamics and the acquisition of novel pathogenic elements. BMC Genomics. 15(1):1007. [PMID:25412680]
(34) Zhu Ge X et al (2014) Comparative Genomic Analysis Shows That Avian Pathogenic Escherichia coli Isolate IMT5155 (O2:K1:H5; ST Complex 95, ST140) Shares Close Relationship with ST95 APEC O1:K1 and Human ExPEC O18:K1 Strains. PLoS One. 9(11):e112048. [PMID:25397580]
(35) Ye L et al (2014) Draft Genome Sequence Analysis of a Pseudomonas putida W15Oct28 Strain with Antagonistic Activity to Gram-Positive and Pseudomonas sp. Pathogens. PLoS One. 9(11):e110038. [PMID:25369289]
(36) Kenzaka T et al (2014) Draft Genome Sequences of Amoeba-Resistant Aeromonas spp. Isolated from Aquatic Environments. Genome Announc. 2(5). [PMID:25359918]
(37) Egan F et al (2014) Tle Distribution and Diversity in Metagenomic Datasets Reveals Niche Specialisation. Environ Microbiol Rep. 7(2):194-203. [PMID:25345349]
(38) Forster A et al (2014) Coevolution of the ATPase ClpV, the Sheath Proteins TssB and TssC and the Accessory Protein TagJ/HsiE1 Distinguishes Type VI Secretion Classes. J Biol Chem. 289(47):33032-43. [PMID:25305017]
(39) Raspoet R et al (2014) Microarray-based detection of Salmonella Enteritidis genes involved in chicken reproductive tract colonization. Appl Environ Microbiol. 80(24):7710-6. [PMID:25281378]
(40) Livny J et al (2014) Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection. Nucleic Acids Res. 42(19):12212-23. [PMID:25262354]
(41) Shen Z et al (2014) Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques. Genome Announc. 2(5). [PMID:25212613]
(42) Jeong JH et al (2014) Purification, crystallization and preliminary X-ray crystallographic analysis of TssL from Vibrio cholerae. Acta Crystallogr F Struct Biol Commun. 70(Pt 9):1260-3. [PMID:25195905]
(43) Hu H et al (2014) Structure of the type VI secretion phospholipase effector Tle1 provides insight into its hydrolysis and membrane targeting. Acta Crystallogr D Biol Crystallogr. 70(Pt 8):2175-2185. [PMID:25084336]
(44) Russell AB et al (2014) A Type VI Secretion-Related Pathway in Bacteroidetes Mediates Interbacterial Antagonism. Cell Host Microbe. 16(2):227-36. [PMID:25070807]
(45) Kwong WK et al (2014) Genomics and host specialization of honey bee and bumble bee gut symbionts. Proc Natl Acad Sci U S A. 111(31):11509-14. [PMID:25053814]
(46) Memisevic V et al (2014) DBSecSys: a database of Burkholderia mallei secretion systems. BMC Bioinformatics. 15:244. [PMID:25030112]
(47) Sarris PF et al (2014) A Phage Tail-Derived Element with Wide Distribution among Both Prokaryotic Domains: A Comparative Genomic and Phylogenetic Study. Genome Biol Evol. 6(7):1739-1747. [PMID:25015235]
(48) Chen Z et al (2014) Cloning, purification, crystallization and preliminary X-ray studies of the putative type VI secretion immunity protein Tli5 (PA5088) from Pseudomonas aeruginosa. Acta Crystallogr F Struct Biol Commun. 70(Pt 7):903-5. [PMID:25005085]
(49) Mora Y et al (2014) Nitrogen-fixing rhizobial strains isolated from common bean seeds: phylogeny, physiology, and genome analysis. Appl Environ Microbiol. 80(18):5644-54. [PMID:25002426]
(50) Zuleta LF et al (2014) The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. BMC Genomics. 15(1):535. [PMID:24972629]
(51) Rydzewski K et al (2014) Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis. BMC Microbiol. 14(1):169. [PMID:24961323]
(52) Coyne MJ et al (2014) Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut. MBio. 5(3). [PMID:24939888]
(53) Alavi P et al (2014) Stenotrophomonas comparative genomics reveals genes and functions that differentiate beneficial and pathogenic bacteria. BMC Genomics. 15:482. [PMID:24939220]
(54) Salomon D et al (2014) Marker for type VI secretion system effectors. Proc Natl Acad Sci U S A. 111(25):9271-6. [PMID:24927539]
(55) Wang S et al (2014) Whole-genome sequencing of Mesorhizobium huakuii 7653R provides molecular insights into host specificity and symbiosis island dynamics. BMC Genomics. 15(1):440. [PMID:24906389]
(56) Siqueira AF et al (2014) Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. BMC Genomics. 15:420. [PMID:24888481]
(57) Lery LM et al (2014) Comparative analysis of Klebsiella pneumoniae genomes identifies a phospholipase D family protein as a novel virulence factor. BMC Biol. 12(1):41. [PMID:24885329]
(58) Bachmann NL et al (2014) Genome analysis and CRISPR typing of Salmonella enterica serovar Vircho. BMC Genomics. 15:389. [PMID:24885207]
(59) De Maayer P et al (2014) Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics. 15(1):404. [PMID:24884520]
(60) Jaradat ZW et al (2014) Cronobacter, an opportunistic food borne pathogen; a review of its virulence and environmental adaptive traits. J Med Microbiol. 63(Pt 8):1023-1037. [PMID:24878566]
(61) Aravena-Roman M et al (2014) Distribution of 13 virulence genes among clinical and environmental Aeromonas spp. in Western Australia. Eur J Clin Microbiol Infect Dis. 33(11):1889-95. [PMID:24859908]
(62) Harrison JW et al (2014) Identification of Possible Virulence Marker from Campylobacter jejuni Isolates. Emerg Infect Dis. 20(6):1026-9. [PMID:24856088]
(63) Jousset A et al (2014) Full-Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas protegens CHA0. Genome Announc. 2(2). [PMID:24762936]
(64) Zhang J et al (2014) Structural basis for recognition of the type VI spike protein VgrG3 by a cognate immunity protein. FEBS Lett. 588(10):1891-8. [PMID:24751834]
(65) Pedron J et al (2014) Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire. BMC Genomics. 15(1):283. [PMID:24735398]
(66) Lu D et al (2014) Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism. Mol Microbiol. 92(5):1092-112. [PMID:24724564]
(67) Dudnik A et al (2014) Genome and Transcriptome Sequences of Pseudomonas syringae pv. syringae B301D-R. Genome Announc. 2(2). [PMID:24723725]
(68) Rudder S et al (2014) Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes. BMC Genomics. 15(1):268. [PMID:24708309]
(69) Yang X et al (2014) Molecular mechanism for self-protection against the type VI secretion system in Vibrio cholerae. Acta Crystallogr D Biol Crystallogr. 70(Pt 4):1094-103. [PMID:24699653]
(70) Kingry LC et al (2014) Comparative review of Francisella tularensis and Francisella novicida. Front Cell Infect Microbiol. 4:35. [PMID:24660164]
(71) Gopinath G et al (2014) Draft Genome Sequences of Nine Salmonella enterica Serovar Bovismorbificans Isolates from Various Sources. Genome Announc. 2(2). [PMID:24604660]
(72) Zhang J et al (2014) Crystallization and preliminary X-ray study of TsiV3 from Vibrio cholerae. Acta Crystallogr F Struct Biol Commun. 70(Pt 3):335-8. [PMID:24598921]
(73) Shyntum DY et al (2014) Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments. BMC Genomics. 15(1):163. [PMID:24571088]
(74) Douzi B et al (2014) Crystal Structure and Self-Interaction of the Type VI Secretion Tail-Tube Protein from Enteroaggregative Escherichia coli. PLoS One. 9(2):e86918. [PMID:24551044]
(75) Adamek M et al (2014) Virulence genes in clinical and environmental Stenotrophomas maltophilia isolates: A genome sequencing and gene expression approach. Microb Pathog. 67-68:20-30. [PMID:24530922]
(76) Ali S et al (2014) A bioinformatics approach to the determination of genes involved in endophytic behavior in Burkholderia spp.. J Theor Biol. 343:193-8. [PMID:24513137]
(77) Brunet YR et al (2014) Type VI secretion and bacteriophage tail tubes share a common assembly pathway. EMBO Rep. 15(3):315-21. [PMID:24488256]
(78) Ushijima B et al (2014) Vibrio coralliilyticus strain OCN008 is an etiological agent of acute Montipora white syndrome. Appl Environ Microbiol. 80(7):2102-9. [PMID:24463971]
(79) Ramos PI et al (2014) Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. BMC Genomics. 15(1):54. [PMID:24450656]
(80) Wright MS et al (2014) New insights into dissemination and variation of the health care-associated pathogen Acinetobacter baumannii from genomic analysis. MBio. 5(1):e00963-13. [PMID:24449752]
(81) Zhou H et al (2014) Population structural analysis of O1 El Tor Vibrio cholerae isolated in China among the seventh cholera pandemic on the basis of multilocus sequence typing and virulence gene profiles. Infect Genet Evol. 22:72-80. [PMID:24448269]
(82) Lu X et al (2014) Identification of Genetic bases of Vibrio fluvialis species-specific biochemical pathways and potential virulence factors by comparative genomic analysis. Appl Environ Microbiol. 80(6):2029-37. [PMID:24441165]
(83) Gardiner DM et al (2014) Genomic Analysis of Xanthomonas translucens Pathogenic on Wheat and Barley Reveals Cross-Kingdom Gene Transfer Events and Diverse Protein Delivery Systems. PLoS One. 9(1):e84995. [PMID:24416331]
(84) Srikannathasan V et al (2013) Structural basis for type VI secreted peptidoglycan DL-endopeptidase function, specificity and neutralization in Serratia marcescens. Acta Crystallogr D Biol Crystallogr. 69(Pt 12):2468-82. [PMID:24311588]
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(89) Ma J et al (2013) Genetic diversity and features analysis of type VI secretion systems loci in avian pathogenic Escherichia coli by wide genomic scanning. Infect Genet Evol. 20:454-64. [PMID:24120694]
(90) Wang T et al (2013) Complex structure of type VI peptidoglycan muramidase effector and a cognate immunity protein. Acta Crystallogr D Biol Crystallogr. 69(Pt 10):1889-1900. [PMID:24100309]
(91) Liu WY et al (2013) Comparative Genome Analysis of Enterobacter cloacae. PLoS One. 8(9):e74487. [PMID:24069314]
(92) Alteri CJ et al (2013) Multicellular Bacteria Deploy the Type VI Secretion System to Preemptively Strike Neighboring Cells. PLoS Pathog. 9(9):e1003608. [PMID:24039579]
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(98) Silverman JM et al (2013) Haemolysin Coregulated Protein Is an Exported Receptor and Chaperone of Type VI Secretion Substrates. Mol Cell. 51(5):584-93. [PMID:23954347]
(99) Franca FL et al (2013) Genotypic and phenotypic characterisation of enteroaggregative Escherichia coli from children in Rio de Janeiro, Brazil. PLoS One. 8(7):e69971. [PMID:23936127]
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