T6SS-HMMER: identify the T6SS gene cluster in the DNA sequence by using profile-HMM searches

Input Your DNA Sequence
Example: example.fas

Example: Vibrio cholerae O1 biovar El Tor str. N16961 [NC_002506]

Example: NC_002506

To Upload Your Sequence
You should:
Upload a Fasta File (Required)
Example: NC_002506.fas

Upload a Ptt File (Optional)
Example: NC_002506.ptt
You should:
Upload a GenBank File (Required)
Example: NC_002506.gbk

Upload Your File (FASTA/PPT/GenBank format) Here
Set Parameters

Select a gene-finding tool for raw DNA sequence submitted*: [linkout Prodigal] [linkout Glimmer3]
SecReT6 HMMER significance E-value threshold <
SecReT6 Maximum interval(bp) between co-localize two T6SS components: (0~100000) bp **

* If user submit an annotated sequence, the gene-finding process will be skipped.
** The putative T6SS core components will be identified within a DNA fragment with the given size.

Please click "Run" after the required file has been uploaded.

Retrieve Results
Input your job ID